rs247581485 SNP Detail

Summary

• ID
  rs247581485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103061255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCTCATG GTGACAGTGT
  CAAGATTTTC CACCCATCTG AGGTGCCTGT TCCTCCCCCA GCCTAGCAGC TGCCTTTAAC
  CCTTCTTAGT GCCCTACTTC TCCTTGGCAC CACCACAGTG ATCTCCAGGT TCGCCAACCT
  CATTTTTCCA CGAGTGCCCC CAGTCTAAAA CTGCTGAAGA TGCTGGCACA GTCACATCTG
  R
  TCAGGTCTCA ATTGACCTAT GTCATTGTCC TCCAACCTGT TTGCAGATAA TTCCCTCTGG
  TCCTCAGATC ATCTCTGGGC CCAACGGAGG AGAGACACAG AGGTGGGGGG CCTGGAAGGG
  GGTTCCCATC TTCTTAGTTG GGGACCCCAA AGGGGGACCC CCAGCAGCAA TTACGCCCAC
  CAACCGCACC TCAGCGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517805	MGP_WTSI_11_103031743	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247581485					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517805	MGP_WTSI_11_103031743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103061255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	118 bp proximal
Fmnl1	formin-like 1	678 bp upstream
Gm51919	predicted gene, 51919	within coordinates
Rr403012	regulatory region 403012	1335 bp downstream
Rr457537	regulatory region 457537	1181 bp distal
Rr457538	regulatory region 457538	167 bp distal
Rr457539	regulatory region 457539	within coordinates
Rr457540	regulatory region 457540	488 bp proximal
Rr457541	regulatory region 457541	1492 bp proximal
Tssr105316	transcription start site region 105316	2 bp downstream
Tssr105317	transcription start site region 105317	64 bp upstream
Tssr105318	transcription start site region 105318	298 bp upstream
Tssr105319	transcription start site region 105319	328 bp upstream
Tssr105320	transcription start site region 105320	417 bp upstream
Tssr105321	transcription start site region 105321	534 bp upstream
Tssr105322	transcription start site region 105322	563 bp upstream
Tssr105323	transcription start site region 105323	652 bp upstream