rs247593476 SNP Detail

Summary

• ID
  rs247593476
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:126395737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGACTCC TGATCTGCGT
  CTTATATGAG AGACCAGGGT TGGGAATCTT CGAGACACCC TGGAAGTTGT GGAGCTTCTG
  AACTTGGATC TGAGATGTAA AATCGTAAAA TGGGCTGGTG CTAAATTCCT CTGTGCGTAG
  CTTGTGCACT ACAGATCTCC AGTGGCAGAC ACTACTTTCA CTCACCGCTC CTCCCAGACA
  K
  ATGTACCAAT GCCATTTGCC TACTAACTGA ACCAATCACT TCTTCCGCTC TCATGGCGGT
  GGTACTGGAG ATTGTATGCA GTGAACAAGC ACTCTTCCAC TGAGCTGCAC CTCCAGCCCT
  GACCCATCAT TTTCAATACC TTAGGATAGT ACATGATCCC TCTCCCCCGG CCCCTCATAT
  TATATAGTAA AGACCCGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322860935	CHEV_8_128192898	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247593476					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:126395737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21286	CpG island 21286	355 bp proximal
Gm30871	predicted gene, 30871	1875 bp upstream
Gm63868	predicted gene, 63868	within coordinates
Map10	microtubule-associated protein 10	820 bp upstream
Rr175263	regulatory region 175263	264 bp proximal
Rr186277	regulatory region 186277	463 bp proximal
Rr188607	regulatory region 188607	1312 bp distal
Tssr80077	transcription start site region 80077	830 bp upstream
Tssr83475	transcription start site region 83475	739 bp downstream