rs247599589 SNP Detail

Summary

• ID
  rs247599589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34176050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAAAAAGG CAAAGGAGGT GACAATGGGA
  CATGATTGGT CATGAAAGTT TAGGGATCCA ATGTCTTATC TTCTGTGGCA TGGCTCAAAA
  GTCACATTAG CCAAAATTTA ACACAGAGAA GAAGAAAAAC AGCGTGTATT ACTACTGTGA
  Y
  TTtatatgca tgtatataca tacatgtata tgcatatgta tatgtgtatg tGTGTATCTT
  TACAAAGATC CCTAGTTCTT CAGTATTAAT CTAATACTTG CAGATAAACA TATTAAGGTT
  TTATGAATAC TTTTTCTAAA ACATATCAAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320224854	CHEV_2_34141558	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247599589					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34176050 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C79798	expressed sequence C79798			1733 bp upstream
Pbx3	pre B cell leukemia homeobox 3			Intron
				Noncoding-Transcript-Variant
Rr555449	regulatory region 555449			1587 bp proximal
Rr555450	regulatory region 555450			1744 bp proximal