rs247601988 SNP Detail

Summary

• ID
  rs247601988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAGGTG CAGGCAGACA
  TTCACACACA ATTCTGAGCC ATTACCCATG GTACCACAGT GTAGGAGGGC AGCTGGCAGT
  GGTAGAGCTG AGATAGAGGG TCCTAGTCAC TGGCACCACA CCCATGCCTG CTGTGGTGAT
  TAGCAGCCTT CCTTGCTGCA GAACAGGTCT ACCTACTGCT CTCAGTGGGG TCCCCACATT
  Y
  TCACATCCCT TCCTAGACTT CTTGAGCCTC AGTCATTGTC TCCTGAGCTC TGTGCAGGAC
  CTGCCTTTGG CAGGAGTGGC AACTGGGGCA TGGACCCGTG GAGCTCTGAT CACCACCTGC
  TTGCCAGGCA TCTCTGGGGA GACCCCCCCC CCCAGTCACA GGGCTTCATG GTGGGTTCAG
  TACACGTGTG TGTGGCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506486	CHEV_8_13389043	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247601988					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439043 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Rr659923	regulatory region 659923	1805 bp proximal
Tssr80440	transcription start site region 80440	1549 bp upstream
Tssr80441	transcription start site region 80441	228 bp upstream
Tssr80442	transcription start site region 80442	650 bp downstream
Tssr80443	transcription start site region 80443	816 bp downstream
Tssr80444	transcription start site region 80444	1056 bp downstream