rs247604563 SNP Detail

Summary

• ID
  rs247604563
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79405941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGCACT CAGACTTCAT
  GTTTTAATAC AGTTTGGTAG CTGTGTGTTT AATCTCTATA AATGAAAATA TTTACTTAAT
  ATTTGAAGTA TTAAAACTTT GACCATTTAA AAATTTCCAT TTTTATTATA CCCCAAATTT
  TGAGGTGGAA AAAATAGAAT TTTATTTATT TAAGATATGT TTATATACAG CTTTTCGGGG
  A
  AAATCTATTG GGTAATAATA AGTATATGTA GATCATATGT TTCCAAAGTG ATTAAGTTAT
  TGAAATATCT ATCATTAACA TATATAAAAG GCACTCTGAT TTAAAAATTA CTTCTGTAGC
  TGGTAAGCAT ACCACTGTAA TAATCTACCC GTGTACGTGG GCTTCAGTCA GGGGTCAGGT
  AGTCCCTAAA GAGTCTCTCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760117	CHEV_11_79328617	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247604563					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79405941 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	194 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	384 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	454 bp downstream
Tssr109487	transcription start site region 109487	652 bp downstream
Tssr109488	transcription start site region 109488	850 bp downstream
Tssr109489	transcription start site region 109489	1156 bp downstream
Tssr109490	transcription start site region 109490	1203 bp downstream
Tssr109491	transcription start site region 109491	1236 bp downstream
Tssr109492	transcription start site region 109492	1263 bp downstream
Tssr109493	transcription start site region 109493	1302 bp downstream
Tssr109494	transcription start site region 109494	1317 bp downstream
Tssr109495	transcription start site region 109495	1357 bp downstream
Tssr109496	transcription start site region 109496	1370 bp downstream
Tssr109497	transcription start site region 109497	1409 bp downstream
Tssr109498	transcription start site region 109498	1470 bp downstream
Tssr109499	transcription start site region 109499	1507 bp downstream
Tssr109500	transcription start site region 109500	1538 bp downstream
Tssr109501	transcription start site region 109501	1578 bp downstream
Tssr109502	transcription start site region 109502	1604 bp downstream
Tssr109503	transcription start site region 109503	1679 bp downstream