rs247617289 SNP Detail

Summary

• ID
  rs247617289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72533692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCTCCA GGATGCCTGG
  TCCATGGGCA CAAAGAGGGA GTAGAGGTAG ATATGGAAGC CTGGAACTTT TGCACCCTGA
  GTCCTGGGAA ATGAGAGGAA GGAAGATATG AAGTGTTGAT CCCCTAATTC CCAGGACCCT
  TGCTTGATGC TGCTACAGCA TTGAAGAATC TATTTCCCCT CCTCCCATCC CCCCATCCCC
  R
  TCTTCCTCTC TCTCTTCTCC CACTTCATGC CTTGGCCTCT GGGCCTTCTC AGACCAACAT
  GGGCACTGTG GAGGGACTCA GGCAGTGAAG GGGGTGACTC ACTCATTGCC CAGTTAAACT
  AATAGCATCC AAATCTTCCA GGCTCACTCT CAGAAGGGGT AACCTGTGGG GCCAATAGCT
  GTGCTTCATC TCAGCCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403771535	MGP_WTSI_X_70735425	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247617289					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771535	MGP_WTSI_X_70735425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72533692 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	709 bp proximal
Rr7746	regulatory region 7746	757 bp proximal
Tssr161208	transcription start site region 161208	677 bp upstream
Tssr161209	transcription start site region 161209	711 bp upstream
Tssr161210	transcription start site region 161210	734 bp upstream
Tssr161211	transcription start site region 161211	763 bp upstream
Tssr161212	transcription start site region 161212	818 bp upstream
Tssr161213	transcription start site region 161213	885 bp upstream
Tssr161214	transcription start site region 161214	1228 bp upstream
Tssr161215	transcription start site region 161215	1879 bp upstream
Tssr161216	transcription start site region 161216	1925 bp upstream
Tssr161217	transcription start site region 161217	1957 bp upstream
Tssr161218	transcription start site region 161218	1977 bp upstream
Tssr163544	transcription start site region 163544	1316 bp downstream
Tssr163545	transcription start site region 163545	1964 bp downstream
Tssr163546	transcription start site region 163546	1995 bp downstream