rs247620482 SNP Detail

Summary

• ID
  rs247620482
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98810058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGTAACA GTAACCCAGG
  TTTAAGGCTG GAGTGTGGAG ACAGAGCTGA GTAGAGCCTC ATTCCTTTCT TTAGACATCG
  CCTAAGAATC TTAAATGAAC TTTTAGTTCT GTTTTCCTAA CTCTTCGTAT CTCTGAGGGC
  TGGATAGTTA CTTTACCCAC CCCAACCCTG TCAGGAGCCT TCTAGAAACC ATCCAATGAT
  M
  TCATTTTAGG TTTCTTAGAA ATCCTTTAGA AATAGAAACT TTGAAATCCT ATAAATGACT
  TTTATTATTA TAATTATTAT TATTTTTAAG TTTCGATTGT CCCTTGAGTT TGTGCCCATT
  CTTGGACTGG TCTCTCTGGG ATCCTTCCAC TACAGCCATG TTTTCGTAGT TTATCTTTCC
  CTGCCCCTAC AGTAAAGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362556667	MGP_WTSI_4_98588512	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247620482					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362556667	MGP_WTSI_4_98588512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98810058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	921 bp proximal
Rr398351	regulatory region 398351	1390 bp upstream
Rr595805	regulatory region 595805	140 bp proximal
Rr595806	regulatory region 595806	1499 bp proximal
Rr595807	regulatory region 595807	1789 bp proximal
Tssr37901	transcription start site region 37901	1107 bp upstream
Tssr37902	transcription start site region 37902	1838 bp upstream
Tssr37903	transcription start site region 37903	1903 bp upstream
Tssr37904	transcription start site region 37904	1930 bp upstream
Tssr37905	transcription start site region 37905	1994 bp upstream
Usp1	ubiquitin specific peptidase 1	1989 bp upstream