rs247623178 SNP Detail

Summary

• ID
  rs247623178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174135876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atatgtgtg tgtgtgtgta tatatatata
  tatatatata tatatgtata tatatatatg tatatatata tatacacaca cacacatata
  tatacatata cacatacata tatatatata gtaaatatat attgtatatt gtgtgtgtgt
  R
  tatatatata tgtatatata tacatatatg tatatCAAAT CGTCCATCTT CCTTTCAATT
  CTGCCATGTC taaaattaaa aaaaaaaaaa aaaaaGCCTC TACCTCAGCA CCAGCCCCTC
  CCCGACTCTA TGTAATTCCC AGTGTCCAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320627369	CHEV_2_174119584	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247623178					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174135876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12856	CpG island 12856	1114 bp proximal
Gm56458	predicted gene, 56458	988 bp upstream
Gm56459	predicted gene, 56459	1254 bp upstream
Gnas	GNAS complex locus	within coordinates
Gnasas1	GNAS antisense RNA 1	within coordinates
Rr374311	regulatory region 374311	217 bp upstream
Rr572094	regulatory region 572094	141 bp proximal
Rr572095	regulatory region 572095	1313 bp proximal
Rr572096	regulatory region 572096	1366 bp proximal
Tssr22102	transcription start site region 22102	669 bp upstream
Tssr22103	transcription start site region 22103	1529 bp upstream
Tssr28008	transcription start site region 28008	75 bp downstream
Tssr28009	transcription start site region 28009	1318 bp downstream