rs247643881 SNP Detail

Summary

• ID
  rs247643881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11888741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTAAGG TAAATGTTAG
  GTCTAACCCA GAAGTAGGGT GATGAATGGC TGTTGCAGGG CTAAGGCCAA CTCTGGATTG
  TTTGGATGTA GAGCTGTATC ATTCCAGCTC TTCACTGCTC TAACCAGGCC CTCGGCTTTG
  CAGATTGTGT AACGGATATG TGGTTGGTTG TCTTCTGGGG CTTAGGGCTT ACTGTCAACA
  S
  GTAGCACACT AGTGACCACG GAAAGGCGAG CTTCTCTGAC TAGAAGAGGG GTCTCATTCA
  CCACTGACCC AGTGTCCGCC TGGGAAGTGA AGGCAGAAAG AGGGTGCACA GGTCACAGAA
  ACCCCACTGG AACACTCACC GCTGCCAACG ATAGTGTTTG TGTAAAAAAT ATAAACGTGT
  GTTCGAAACC ATGGTGCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494086	CHEV_8_11838741	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247643881					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11888741 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	221 bp downstream
Tex29	testis expressed 29	1747 bp upstream
Tssr76253	transcription start site region 76253	1760 bp upstream
Tssr76254	transcription start site region 76254	1773 bp upstream
Tssr76255	transcription start site region 76255	1827 bp upstream