rs247647168 SNP Detail

Summary

• ID
  rs247647168
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCACGCC AATTCTGCGC
  GCGCGCGCGC GCGCGCACAC ACACACACAC ACACACACAC ACACACACAC ACACACAAAT
  ATCTCTCAGC CTAGAAATGG TTCCAATAGC TCAGAGATGT TTTCATAGCT TTAAAGAGCT
  CAATGCAGAG AAGTGAGTTT GGTGCTGACT ACAGGCGTTA GTAATGAGCA CACTTCATCA
  K
  TGAGATGTGC TGGCCCAGGC AGTGTCCATG GATCAGGGCA CCTAACCTGT CCAGCTGTCT
  CTGAGGGAGG CTGTTACTAT GTATTCCTTA GGATGTAGGG AACTGGAATT CAGCCAGTCT
  AACTTACATT CTCAGAGCCT TCTTGGCCAC AATACTGATT TGTTTTTTAT TTGTGTTTTA
  AACCTTGTGT ATGCACAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355141	CHEV_17_29983881	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247647168					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065910 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	310 bp distal
Rr330463	regulatory region 330463	1491 bp proximal
Rr341132	regulatory region 341132	110 bp distal
Rr341133	regulatory region 341133	1832 bp proximal
Rr392501	regulatory region 392501	within coordinates
Rr392502	regulatory region 392502	1847 bp upstream
Tssr143596	transcription start site region 143596	401 bp downstream
Tssr143597	transcription start site region 143597	378 bp downstream
Tssr143598	transcription start site region 143598	1284 bp upstream