rs247653074 SNP Detail

Summary

• ID
  rs247653074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137639001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCTTGTC CTGCCTGGGC
  TACCTGCCTG TGCAAGCCTT TCCCTTTGGA AATGACAGGC CTCTCCTGTC CCAGTCCCCT
  GTGTTAACCA CCCGTCTGTT ACCTGCTGGC AGCTTCTATG TGTCATTTGT CCCCAGGTAT
  GGGGCAGTGT CTACCAGGAG TTCCCACCCT CTTAACCTTG CTGGGGGAAT TCGAGGGGGA
  R
  ACCTAACCTG GGCCCCTCCC CCCAGGAGTC CCTGTGCCAG CCCCACCACA TCCTGGAAGA
  GGAAGGGGCC CCTGGAAGGG GCCTCCCTCA CATCGCTGCT GTCCTTCACG CACTTCTGGA
  ACAGCCTTAG GGGTAGAGGT TGGGGGCTCT GGGCCCCAAC TACCATCGGA CCTGTCCTGG
  GAGCAGATGA CACCTGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702661	CHEV_5_138081967	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247653074					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137639001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	376 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Sap25	sin3 associated polypeptide	734 bp upstream
Tssr49364	transcription start site region 49364	537 bp upstream