rs247670074 SNP Detail

Summary

• ID
  rs247670074
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:105572198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGTGGT TGCCATTAAA
  ATAAATGCCT CATTAATTGT ATTTAGAATC AGATGATTTG AAATGACTCC AAATGGTTCT
  ACCAGTTGTA ATAGCTAGTA TTTCAAGCTT TTTCCTCGCT GAAAATCCAT AACGTAAACG
  ACTCAGCTGG CTTCCACTCT GCCTTTTTGC ATGTGTCTTG GTCCCTTTAG GTTCCCATTA
  S
  CAGCACCCAG ATTTCCTGCT GGTCCAACTG CTGGTCCTCT AAGATGAAAT GAAGGATGTG
  GCAGTCCCAG AATTCCTGGT GCTGAGTTTG TAGAGTGACG CAGCATGAAT GGATCACCCA
  TTGTGTGTCC AGTATCACTG TCAGGATTCC ATTCTGGGTA GATTTCAAGA AGAAGCTGGC
  ATCGACAACT GTGACTTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss375902293	MGP_WTSI_8_107369466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs247670074					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375902293	MGP_WTSI_8_107369466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:105572198 () rs orientation: forward

Symbol	Name	Function Class
Ces2c	carboxylesterase 2C	1502 bp upstream
Gm33715	predicted gene, 33715	within coordinates
Matr3-ps2	matrin 3, pseudogene 2	70 bp downstream
Rr668766	regulatory region 668766	1156 bp proximal
Tssr79079	transcription start site region 79079	1495 bp upstream