rs247680563 SNP Detail

Summary

• ID
  rs247680563
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74818333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTCTCTC CACTGTAAGC
  AACAGATACT TACAAAAAAA AAGCTGTTTG CTACTCAGTG GAGCTTGGAG AGTGGTTTAT
  AAAGTCCTCT CCTCCTCCTC CTCTTCCTCT TTTCCTTTGT TGAGACAGAG TCTCATATAG
  TCCAAGTAAG CTTCAAACTC TGTGGCCTTG AACTCTTGAT CTTGCTGTCA CTCCCCAAGT
  S
  CTGGGATTTG GAGGCATGGA TTTGGCTGGG CTCTACTGTT CTTGAGTCCT TTGGTCCTTT
  GAGAGCGTGT CACAATTCGC CCATTGGTGC CTAGGAAAAG CTCCTCTAGT GGAACTTTTT
  TTTTTCTTCT TATATTCTAT CATCATAGTA GCAGTTAGTC TCAGTATTCT AATGACATAG
  TCTAGGCAGT ATTTTCATGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss383890624	MGP_WTSI_11_74741009	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247680563					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890624	MGP_WTSI_11_74741009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74818333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	1063 bp distal
Gm72316	predicted gene, 72316	1151 bp downstream
Rr451010	regulatory region 451010	1745 bp distal
Rr451011	regulatory region 451011	1674 bp distal
Rr451012	regulatory region 451012	1398 bp distal
Rr451013	regulatory region 451013	1478 bp distal
Rr451014	regulatory region 451014	437 bp distal
Rr451015	regulatory region 451015	523 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	1559 bp upstream
Tssr102917	transcription start site region 102917	1674 bp downstream
Tssr102918	transcription start site region 102918	1640 bp downstream
Tssr102919	transcription start site region 102919	1598 bp downstream
Tssr102920	transcription start site region 102920	1374 bp downstream
Tssr102921	transcription start site region 102921	620 bp downstream
Tssr102922	transcription start site region 102922	185 bp upstream
Tssr102923	transcription start site region 102923	205 bp upstream
Tssr102924	transcription start site region 102924	219 bp upstream
Tssr109155	transcription start site region 109155	1791 bp upstream
Tssr109156	transcription start site region 109156	1522 bp upstream
Tssr109157	transcription start site region 109157	12 bp downstream