rs247688596 SNP Detail

Summary

• ID
  rs247688596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78071496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTAATGA AAGCTCTCTG
  AAGTCCTGTT CTTGGGCAAG GGTTGAGGGA AGCAGACCAA CCGGTTGGGC ATGGCTAAAT
  GGGTGAGGAC AAGACACTGT CCAAAAGCCT GCCAACCCAT ACTGCCCTGA AATGGATGCT
  GACAATTCTA AAATAACCCC TCTGCTCTTC CAAACCCTGG TATTGGTTTC ACACCAGCCT
  S
  TAGCAGGGAA GGAATTCTTG TAAAGCTTGT CCTTTGAGCC TGTGATGGAG CAGTGTCCCA
  GGAGAACCAA CACCTGTCTA TAATAAATGA CCCTGGTACT GAGCTAGCAT GGGGACTGCA
  TCATCATGTG TCCCCATTGG GTTAAGCAAA TCAAGTCTTA ATTGCTCAGA GCTGAGAAAG
  CCCTGGGTTT GATCCCAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323756290	CHEV_11_77994172	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247688596					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78071496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	1269 bp distal
Mir7653	microRNA 7653	1783 bp downstream
Rpl23a	ribosomal protein L23A	265 bp downstream
Rr451900	regulatory region 451900	1898 bp distal
Rr451901	regulatory region 451901	1389 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	1017 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	632 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103233	transcription start site region 103233	1975 bp downstream
Tssr103234	transcription start site region 103234	1898 bp downstream
Tssr103235	transcription start site region 103235	1684 bp downstream
Tssr103236	transcription start site region 103236	1668 bp downstream