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rs247689852 SNP Detail
Summary
  • ID
    rs247689852
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:123260390 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTCATGAG CAAGACAGAT
GTGCAAGACA GATGTGAAAA GGAGAATCCC TTTCTTCTTG TTGCATTTGT TAGAGAATTG
ATCTGTACAG TCTAAAAAGA GGTCTTTCAG GTTATGGCAA GACCATCAGA CAATGCTGTG
GACTTTTAGC AATGGGAACA AGTCATTTTA CTTATGTCCC AGTAATACAT ACATGTGCAG
Y
CCTTCTGATG CCTGATAGAT ATTTTCTTAT GTTGGATTTT GGTTGTTATT ACATTCACTC
TTGTTCTTCT TCATGCATGT AAGCCATGTC CCTTGTATTT CCTTGCACTT AGTCCAGAGG
ACTTATTTCT GGCATCTCAC AAATCCAAGG CATACTGTAG AAACAGGGTA TATCATTCCA
GTTCTTCCTG GAGTTTGAAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922407 MGP_WTSI_6_123233449 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247689852 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922407 MGP_WTSI_6_123233449 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123260390 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e within coordinates
Tssr58808 transcription start site region 58808 651 bp downstream
Tssr58809 transcription start site region 58809 14 bp downstream
Tssr58810 transcription start site region 58810 within coordinates
Tssr58811 transcription start site region 58811 23 bp upstream
Tssr63019 transcription start site region 63019 1859 bp upstream
Tssr63020 transcription start site region 63020 927 bp upstream
Tssr63021 transcription start site region 63021 849 bp upstream
Tssr63022 transcription start site region 63022 810 bp upstream
Tssr63023 transcription start site region 63023 755 bp upstream
Tssr63024 transcription start site region 63024 657 bp upstream
Tssr63025 transcription start site region 63025 625 bp upstream
Tssr63026 transcription start site region 63026 604 bp upstream
Tssr63027 transcription start site region 63027 566 bp upstream
Tssr63028 transcription start site region 63028 541 bp upstream
Tssr63029 transcription start site region 63029 513 bp upstream
Tssr63030 transcription start site region 63030 457 bp upstream
Tssr63031 transcription start site region 63031 427 bp upstream
Tssr63032 transcription start site region 63032 396 bp upstream
Tssr63033 transcription start site region 63033 382 bp upstream
Tssr63034 transcription start site region 63034 356 bp upstream
Tssr63035 transcription start site region 63035 341 bp upstream
Tssr63036 transcription start site region 63036 274 bp upstream
Tssr63037 transcription start site region 63037 241 bp upstream
Tssr63038 transcription start site region 63038 216 bp upstream
Tssr63039 transcription start site region 63039 148 bp upstream
Tssr63040 transcription start site region 63040 104 bp upstream
Tssr63041 transcription start site region 63041 57 bp upstream
Tssr63042 transcription start site region 63042 37 bp upstream
Tssr63043 transcription start site region 63043 20 bp upstream
Tssr63044 transcription start site region 63044 within coordinates
Tssr63045 transcription start site region 63045 82 bp downstream
Tssr63046 transcription start site region 63046 101 bp downstream
Tssr63047 transcription start site region 63047 124 bp downstream
Tssr63048 transcription start site region 63048 152 bp downstream
Tssr63049 transcription start site region 63049 167 bp downstream
Tssr63050 transcription start site region 63050 191 bp downstream
Tssr63051 transcription start site region 63051 243 bp downstream
Tssr63052 transcription start site region 63052 1756 bp downstream
Tssr63053 transcription start site region 63053 1866 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory