rs247690664 SNP Detail

Summary

• ID
  rs247690664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87753895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGACCC ACGGGGCGCG
  CCCCCGGCCC GGCCCGGCCC GGCCTCGCGG GGATGCGGGC TAACGGCGCC CGCTCGCCTC
  GGGGCCCCGC GCTCCTCCCC ACCCCACCCC CCGCGCATGG CGGCCGGGCG GACAAAGGCG
  CTTCCTGGCG CCCGCGCTCG CTCGGCGGTG GCCGTTGGCG GTTTGAATCC GGCCCCCGGG
  R
  CTGACCTTTG GCGCCGCCTC GGCCGCAGCC CCTCCTGCTC TGCTCTCTCG ACCGAGCCCA
  CGGCCCCGCA CCCCAGATCC ATCCTCCCCC GGCCAAGCCC CGCAGCGGTC CCCCGACTCA
  TCTAAAAGGG AACCCAAGAG GACAGGGGTG GGGGACACCT GCGACACAAG TGTCGCGGGG
  GGCCTCCTGG CTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399364114	MGP_WTSI_17_87845807	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247690664					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399364114	MGP_WTSI_17_87845807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87753895 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	within coordinates
Cpgi9626	CpG island 9626	within coordinates
Gm65472	predicted gene, 65472	136 bp upstream
Rr370330	regulatory region 370330	267 bp upstream
Rr370331	regulatory region 370331	591 bp upstream
Rr393074	regulatory region 393074	within coordinates
Rr532694	regulatory region 532694	420 bp distal
Rr532695	regulatory region 532695	within coordinates
Rr532696	regulatory region 532696	147 bp proximal
Rr532697	regulatory region 532697	379 bp proximal
Tssr146185	transcription start site region 146185	317 bp downstream
Tssr146186	transcription start site region 146186	210 bp upstream
Tssr146187	transcription start site region 146187	758 bp upstream
Tssr149773	transcription start site region 149773	387 bp downstream