rs247690733 SNP Detail

Summary

• ID
  rs247690733
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:121151324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCGGTA GATGTGAGCA
  TGGGCCACTC GAGCTTCATC TCGCGGCGCC ACCTGGAGAT CTTCACGCCC CCGGGCGGCG
  GCCATAGCGC GGCCGCCCCG GAACCCGCGC AGCCCCGGCC GGACGCGGGC GGCGACTTCT
  ACCTGCGCTG TCTCGGCAAG AACGGCGTGT TCGTGGACGG GGTGTTCCAG CGGCGGGGGG
  C
  GCCGCCGCTG CAGCTGCCGC GCGTGTGAGT GGCGGGAGGG GGGCAGTGTC CTGGACCTGA
  CCCACGGTGG CTACCCAAGA GCAGGGAGGG ACCCTGACCC ACAGCAGCCA CCCCCGGGGA
  GGGGCGGGAC CCGCACTCAG ACCCACTGCC CATCATCAGG CAGGACGCAG AAGACCCACG
  TCAGCTACCC ATGAGCAGGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss384958720	MGP_WTSI_11_121121812	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs247690733					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384958720	MGP_WTSI_11_121121812	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121151324 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4342	CpG island 4342			within coordinates
Foxk2	forkhead box K2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr461946	regulatory region 461946			498 bp distal
Tssr106398	transcription start site region 106398			443 bp downstream
Tssr106399	transcription start site region 106399			377 bp downstream
Tssr106400	transcription start site region 106400			698 bp upstream