rs247699122 SNP Detail

Summary

• ID
  rs247699122
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47884952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGAGT GAGATACAAT
  CTCTTACTCA GATGCTACTC TGATCTCTAC AGAACTCCCC AATTCTGGGA AGCCTACATG
  GTCAAAACAG GAATGGGCAG GCGCCTCTTC ATCTATCAAT ATATTGCATG CCTTCAAATC
  TTCCCCAAAA TCCGTTAAGA AGAAAACTGG TACAAGCTAA AAGCAGTAAA CTGTGCTTTT
  T
  GTCCGGGGGG GGGGGGGGGG CGCAGGGGGG AGGGGAGAAA TAGTCTTTCG GTAGCTACAT
  TATACCTTAT AGTTTTCAAT AAGGTTTAAT TTCTGATTGT TTTAAGAGAT AACTCAGATG
  GGGAGTGCTA ATTCCTTTTA GCAAGTTAGT TGTGGGTTTC AGCGACATGG ACATGACATC
  GGTGAGTAGT GAGCAGCAGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ
ss391014690	MGP_WTSI_14_48267170	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	NON/ShiLtJ	PWK/PhJ
rs247699122					SNP	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391014690	MGP_WTSI_14_48267170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47884952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	1289 bp proximal
Ktn1	kinectin 1	1599 bp upstream
Rr297095	regulatory region 297095	848 bp proximal
Tssr125321	transcription start site region 125321	904 bp upstream
Tssr125322	transcription start site region 125322	952 bp upstream
Tssr125323	transcription start site region 125323	1607 bp upstream
Tssr125324	transcription start site region 125324	1798 bp upstream
Tssr128337	transcription start site region 128337	1719 bp downstream