rs247700870 SNP Detail

Summary

• ID
  rs247700870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:43017612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCCGAG CCGTCCCCTC
  CCCCGCCGAC TTTTTTGGGC CCTTCTCCCT GGGACTTCGG GAAGCCGCTT CACCCGGGAT
  CCCTCCGCTT CCCGGACTCT CCAAACTTGA GCAGATACTT CCGCTCAGTG CTGTCGCGGG
  GGATAGAGGG AAGCGAAAAA GTAGTTCTGT GTGGCGAAGC GGGCACTGCT GCCTTCTTGC
  Y
  CCTCGAATGC TCTCGAGGTG CAGCCCACAG TGTACAATCC ACCCGGGACA GCAGAGGAGC
  CATTCCACAG TCTCGAGGAG TTCACGTTTA GAGGTTCTTC GGAACTCCCG GGCTGGAAAC
  TTTTATTCTT TAAGAGAATG TATTCGTTCC CGGTGTCAAA TGCTTTTGAT GACTGCGTGC
  GAGCCCAGGT CCACGGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377380661	MGP_WTSI_9_42914400	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247700870					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377380661	MGP_WTSI_9_42914400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:43017612 () rs orientation: forward

Symbol	Name	Function Class
Arhgef12	Rho guanine nucleotide exchange factor 12	543 bp upstream
Cpgi21624	CpG island 21624	within coordinates
Rr677324	regulatory region 677324	842 bp distal
Rr677325	regulatory region 677325	within coordinates
Rr677326	regulatory region 677326	1112 bp proximal
Rr677327	regulatory region 677327	1161 bp proximal
Tssr89073	transcription start site region 89073	1772 bp upstream
Tssr89074	transcription start site region 89074	524 bp upstream
Tssr89075	transcription start site region 89075	443 bp upstream
Tssr89076	transcription start site region 89076	291 bp upstream
Tssr89077	transcription start site region 89077	221 bp upstream
Tssr89078	transcription start site region 89078	149 bp upstream
Tssr89079	transcription start site region 89079	121 bp upstream
Tssr89080	transcription start site region 89080	701 bp downstream
Tssr89081	transcription start site region 89081	785 bp downstream
Tssr89082	transcription start site region 89082	820 bp downstream