rs247713329 SNP Detail

Summary

• ID
  rs247713329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68913856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTTC AGAGGAATTC
  CATGCAGTTT GCTCTAACGG TTCTGGAAGA TATGAGAGTG AGCGGAAAAC TTGCGTTGTG
  AGTTTCTGTG TTTTAGAGTA GTACTGACCT CTTTCTCATA TTTCCGCTGA AAGCGGCATG
  GGTGCTGAGC GCCTCTGCGC CCTTAGACTG GAGTGAATGT GATGTGGAGT TGCGTGACTC
  R
  CCCTTTACTG TTGGATTGTC TTTTGGGGCG CAATACTAAT TTTTACTTTA TAAAGTGTGT
  CAGTGTTGGG TGACGCGGGC ATATGTACAT GAGTGCAGGT GCCCCTGGAG GGCATGAACC
  TCGAGCATCC CATTGTGGGT GCTGAAAACC AAACTTGGGT TCTACACAAG AAAAAAATTG
  CTGGGCCCCC TAGATTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313322	MGP_WTSI_3_68810445	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247713329					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313322	MGP_WTSI_3_68810445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68913856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	36 bp distal
Ift80	intraflagellar transport 80	1964 bp upstream
Rr397713	regulatory region 397713	1734 bp downstream
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29506	transcription start site region 29506	1792 bp downstream
Tssr29507	transcription start site region 29507	1502 bp downstream
Tssr29508	transcription start site region 29508	1381 bp downstream
Tssr29509	transcription start site region 29509	1210 bp downstream
Tssr29510	transcription start site region 29510	1169 bp downstream
Tssr29511	transcription start site region 29511	1038 bp downstream
Tssr29512	transcription start site region 29512	781 bp downstream
Tssr29513	transcription start site region 29513	577 bp downstream
Tssr29514	transcription start site region 29514	451 bp downstream
Tssr33519	transcription start site region 33519	1978 bp upstream
Tssr33520	transcription start site region 33520	1959 bp upstream
Tssr33521	transcription start site region 33521	1938 bp upstream
Tssr33522	transcription start site region 33522	94 bp upstream