rs247720936 SNP Detail

Summary

• ID
  rs247720936
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122642165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGTACCT ACAGCAAGGG
  GCACTGAGAG TAGGAAGGTC ATGACCTCTC TTAGTTTGTC TGTGATGCTC ACTGGGTTTG
  GCTTTTGTTC TGTAGTCCCC TCCTTCAGGG GCTGGAGGTG CACCCTACAA CACGGGTTCC
  CAGTTTTTCC CTCAGGCCAT CTTCCTCCTT GTCCGGTCCC CTCCTGAAAG ATGTTTGGTG
  K
  TTTTTTTTGT TTTGTTTTTC CAGAGCTGAG GACCGAACCC AGGGCCTTGA GCTTGCTAGG
  CAAGCTCTCT ACCACTGAGC TAAATCCCCG AGTCCCCCCC ACCCCCCGGA AAGATGCTTT
  ATTATCTAAA GCAGCTCCCC TCCCCAGGAT GCCTACTATC ACATTATTCA AGGGTCTCTG
  CTGCCCTAGC ACTTTTCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519200	MGP_WTSI_5_122954111	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247720936					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519200	MGP_WTSI_5_122954111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122642165 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	1877 bp upstream
Cpgi16553	CpG island 16553	1044 bp distal
Gm57291	predicted gene, 57291	500 bp downstream
Rr378565	regulatory region 378565	within coordinates
Rr399329	regulatory region 399329	349 bp downstream
Tssr48701	transcription start site region 48701	1620 bp downstream
Tssr53131	transcription start site region 53131	1957 bp upstream
Tssr53132	transcription start site region 53132	1926 bp upstream
Tssr53133	transcription start site region 53133	1858 bp upstream
Tssr53134	transcription start site region 53134	1824 bp upstream
Tssr53135	transcription start site region 53135	1808 bp upstream
Tssr53136	transcription start site region 53136	1448 bp upstream
Tssr53137	transcription start site region 53137	1360 bp upstream