rs247723700 SNP Detail

Summary

• ID
  rs247723700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88997468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACCGAC CAGCTAGCTG
  GGCCTTTAAG AAGGAAGATG ACTGGGCGAG GAAACCGAGG GCTGCACCCA CACCGAGCAC
  GTGGGAGCCT CGACCAATGA AAAGACAGAC AGACGGGAAA GGGTGGGGAG TCTTGGAGAA
  CCCACGTAGT CACCTTGCAC CTTGTCAATG CTAGGCTCTA GCTTCACCCT ACTTGCGGCG
  K
  GGCTAATGGA GGGGATGTGG CTAGAATCTC CTGGGAGGGG ACAATAGGTC CAAACCACCG
  AGGCCAAGAA CTTCCCTAGC GGAGGAATTC CACAGAGGGT GTGACTCCAG GTCCCTAACA
  ATGGACCTCT TAAGCTGGGC AGACCAGGTG GAGCCCGCTG TGCAGCGAGG GGAGCAGTCA
  CGCTCCTCAC CCCCAGCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358806291	MGP_WTSI_3_88894083	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247723700					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358806291	MGP_WTSI_3_88894083	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88997468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13396	CpG island 13396			within coordinates
Gm65858	predicted gene, 65858			28 bp downstream
Rr397780	regulatory region 397780			within coordinates
Rr579942	regulatory region 579942			1369 bp distal
Rr579943	regulatory region 579943			within coordinates
Rr579944	regulatory region 579944			676 bp proximal
Rusc1	RUN and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr30034	transcription start site region 30034			1357 bp downstream
Tssr34080	transcription start site region 34080			492 bp upstream
Tssr34081	transcription start site region 34081			445 bp upstream
Tssr34082	transcription start site region 34082			402 bp upstream
Tssr34083	transcription start site region 34083			291 bp upstream
Tssr34084	transcription start site region 34084			153 bp upstream
Tssr34085	transcription start site region 34085			1369 bp downstream