rs247724629 SNP Detail

Summary

• ID
  rs247724629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117580611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGCACAT CTGAATTTTT
  TTCATGTTCA AAAGTTTGGA AGTGTGTGTG TTTCACCCAA GTGACTTTAT AATCAAAGAG
  TAAATGACAC ATGCGACCGA TGAACTTAGG AAGCAAAACC TTACTGCTCA TTTTGTGAAG
  ACTTCCAAGA AGTTTGTCCC CAGCTGCGCT TAAGCAGGGG TACCGTGCGC TTACAATTGG
  R
  CACTTGGTGG GCATCGCACA CCTGAGCTGC TGTCTCCTCT GCTCTCGTCA CCTCCTCAGT
  TACGCTTTCT TCTCATGTCT GTTGTCTCTA TACTTGTAGT CTCTAAACCT TGGGTTACAG
  CTTCAAAATT TACAAAGTCT ACTAAAAAGG CACAAAAAGA AAAAAAAAAG TTACCAACCA
  CTTGATAAAG GGACGTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499170	CHEV_10_117181762	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247724629					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117580611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	887 bp proximal
Cpgi2239	CpG island 2239	1590 bp proximal
Gm66856	predicted gene, 66856	1775 bp upstream
Rr439608	regulatory region 439608	249 bp distal
Rr439609	regulatory region 439609	862 bp distal
Rr439610	regulatory region 439610	1236 bp proximal
Rr439611	regulatory region 439611	1649 bp proximal
Rr439612	regulatory region 439612	1786 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1625 bp downstream
Tssr99472	transcription start site region 99472	1650 bp downstream