rs247726667 SNP Detail

Summary

• ID
  rs247726667
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192806754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTAACT AAGCTGGGCT
  TCAGGCCTAG AGCATGATTC AACTTTACTC GGGATATTAG TAGATTAAAT TTATGCTCCA
  GCCGGGCGTG GTGGCACACG CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAGGTGGATT
  TCTGAGTCCC AGGACAGCCA GGGCAATACA GAGAAACCCT GTCTCGAAAA ACCAAAAAAA
  G
  AAAAAAAAAA AAAAAAAGCT CCAAATGGTG GATTCCAGGC AGGAAGTCAA GTGACTATTT
  GATCTTTTGA GTCAGGGTCT TCTCTGGCTT AGTGTCTTAG CTGACTCACT ATTAGCTCAG
  GATGACCTTG AACTTCTGAT CTCCCATCTC TAGCTCCTGT ATGCTAGGAG CTGCGGAGGG
  AACTCAGGGC TGTGCATGCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss352867080	MGP_WTSI_1_194950640	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs247726667					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352867080	MGP_WTSI_1_194950640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192806754 () rs orientation: forward

Symbol	Name	Function Class
Rr15354	regulatory region 15354	1447 bp proximal
Rr367086	regulatory region 367086	1380 bp downstream
Utp25	UTP25 small subunit processome component	within coordinates