rs247739842 SNP Detail

Summary

• ID
  rs247739842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64087630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTTGA ACCTAGTGTG
  TAGCTCAGGT TAGTTTTAAA CTTATGATCC CCTTGCCTCC CACATTTCTA ACCTTAGTGT
  AGTGGCACTT GCCTTTAATC CCAGCACTTT GGAGGCAGAA GCAAGTAGAT ATCTGTAAAT
  TCAAGGCCAG CTTGGTCTAC TGAGTTGTAG GACTGCCAGT GTTACAAAGA ACCTCTTCAT
  R
  GGGAAAGAAA GGGGTGAGGA GGTAAAGCTG CCCTCCCCTT CTAGAGCAGT TCAGGGATGC
  CAACCTATAT GGCATCTAGT GGAATTCACT CACTATAGTA ACCCAGCAGA ATACTCAGTG
  AAATAAATAT CTTTGACTTT TCTTTCCTAG GTTGAAGAAT TAGCCCTTCA ATCCATGATA
  AATTCTCGAG GAAGGACCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838421	MGP_WTSI_9_64028155	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247739842					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838421	MGP_WTSI_9_64028155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64087630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	710 bp distal
Rpl4	ribosomal protein L4	1682 bp downstream
Rr368801	regulatory region 368801	986 bp downstream
Snapc5	small nuclear RNA activating complex, polypeptide 5	within coordinates
Tssr85605	transcription start site region 85605	1992 bp downstream
Tssr85606	transcription start site region 85606	1932 bp downstream
Tssr85607	transcription start site region 85607	1066 bp downstream
Tssr85608	transcription start site region 85608	999 bp downstream
Tssr90133	transcription start site region 90133	1969 bp upstream
Tssr90134	transcription start site region 90134	1899 bp upstream