rs247741471 SNP Detail

Summary

• ID
  rs247741471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAATCCC TGACACTATG
  AAAGGCATAC TTTATACAAA ATATAATGTG TAACACATAA TAGGACAAGA TTGTACCACA
  AGGTGAAAGC CTGTGTTGAG CCAAGAGCAT CAAAACCAGA GGGAGGACTG AGCAGGCGCA
  AAGGAGGAAA GGGGAGGAGT CTGACTCACC CACATTACCA CACAGTTCAG ACAGCACAGA
  Y
  AGGAGAAACC CTTTTCATAA ATAAAAGAGA GGTGGAGGTG GAAGACAGGA GCCAGGAGAC
  TCATGATTGC CATGGGCTTT TGAAAAGCGA TCCTGACTGA GGTATCACTG ACAAGAACAA
  AGAATGAAAA AACTCAACAA AAAGTATACA GTTAATGAAA TTATAGCATT GGGGAAAAAA
  AAGACAGACA CAAAGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873383	MGP_WTSI_5_137624276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247741471					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873383	MGP_WTSI_5_137624276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177253 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	854 bp downstream
Tssr49309	transcription start site region 49309	1373 bp upstream
Tssr49310	transcription start site region 49310	1733 bp upstream
Tssr49311	transcription start site region 49311	1747 bp upstream
Tssr53917	transcription start site region 53917	1699 bp upstream
Tssr53918	transcription start site region 53918	1639 bp upstream
Tssr53919	transcription start site region 53919	1233 bp downstream
Tssr53920	transcription start site region 53920	1249 bp downstream
Tssr53921	transcription start site region 53921	1404 bp downstream
Tssr53922	transcription start site region 53922	1445 bp downstream
Tssr53923	transcription start site region 53923	1486 bp downstream
Tssr53924	transcription start site region 53924	1500 bp downstream
Tssr53925	transcription start site region 53925	1538 bp downstream
Tssr53926	transcription start site region 53926	1569 bp downstream
Tssr53927	transcription start site region 53927	1718 bp downstream
Tssr53928	transcription start site region 53928	1736 bp downstream
Tssr53929	transcription start site region 53929	1773 bp downstream
Tssr53930	transcription start site region 53930	1838 bp downstream
Tssr53931	transcription start site region 53931	1863 bp downstream
Tssr53932	transcription start site region 53932	1879 bp downstream
Tssr53933	transcription start site region 53933	1917 bp downstream
Tssr53934	transcription start site region 53934	1949 bp downstream
Tssr53935	transcription start site region 53935	2000 bp downstream