rs247742539 SNP Detail

Summary

• ID
  rs247742539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106076154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTAGCGGG GATGTGCACA CCCCGTCGGT TTTCCAGGTC
  AGCACAGAAC CAGACGGGAT CAGGCAGAGG GTCTGGAGGG AACGCGGGGG GGGGGGGGGG
  R
  GCAGGGACAC TCACTCTGCG TAGCCTGCGT TCCAAGGCAG TGTGCGGCCC CGTGCTGGGC
  TGCGCACCGG CCGGGCATCG GGGCGGCGCG AGGCGTCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
ss378824393	MGP_WTSI_9_106101286	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
rs247742539					SNP	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378824393	MGP_WTSI_9_106101286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106076154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22254	CpG island 22254	within coordinates
Ppm1m	protein phosphatase 1M	within coordinates
Rr205657	regulatory region 205657	within coordinates
Tssr3004	transcription start site region 3004	1479 bp upstream
Tssr91296	transcription start site region 91296	183 bp downstream
Tssr91297	transcription start site region 91297	235 bp downstream
Tssr91298	transcription start site region 91298	298 bp downstream