rs247744452 SNP Detail

Summary

• ID
  rs247744452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAAAC ACAGGAGATC
  TTAAATATCA GAAATAGCAG CCTTAACATA GCAAACAACT TACATATTTG TTATTTAACT
  ATCATTTTGG GAGATGGAAA TTATAATCTC CATTTTATCA ATGAGAAAAC CCATTTGCCT
  ACATCATCAG ATGGTGGGAC ATTACTGGAT TTTTATGCTG TTATGCAGAT CTATAGATTT
  R
  AACTCATAAA GGGGCATCAT GGTGAGTACT GCTGGCCTGG CATATGTGCT GCCTCTGTTC
  TTCTACCTTA CACCAATATT ACTTTTACTG CTCTGCCAGA GTTTGTTTTC CTGAGGCATC
  CTTCATGTAC AGTAAGCCAC ATCTTAGGTT TTAGGGCAGT CAAGCCCCTA AATTCATAGC
  TGCTGCTTGA TTTCAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922424	MGP_WTSI_6_123233920	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247744452					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922424	MGP_WTSI_6_123233920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260861 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	Intron
Tssr58808	transcription start site region 58808	1122 bp downstream
Tssr58809	transcription start site region 58809	485 bp downstream
Tssr58810	transcription start site region 58810	460 bp downstream
Tssr58811	transcription start site region 58811	371 bp downstream
Tssr63020	transcription start site region 63020	1398 bp upstream
Tssr63021	transcription start site region 63021	1320 bp upstream
Tssr63022	transcription start site region 63022	1281 bp upstream
Tssr63023	transcription start site region 63023	1226 bp upstream
Tssr63024	transcription start site region 63024	1128 bp upstream
Tssr63025	transcription start site region 63025	1096 bp upstream
Tssr63026	transcription start site region 63026	1075 bp upstream
Tssr63027	transcription start site region 63027	1037 bp upstream
Tssr63028	transcription start site region 63028	1012 bp upstream
Tssr63029	transcription start site region 63029	984 bp upstream
Tssr63030	transcription start site region 63030	928 bp upstream
Tssr63031	transcription start site region 63031	898 bp upstream
Tssr63032	transcription start site region 63032	867 bp upstream
Tssr63033	transcription start site region 63033	853 bp upstream
Tssr63034	transcription start site region 63034	827 bp upstream
Tssr63035	transcription start site region 63035	812 bp upstream
Tssr63036	transcription start site region 63036	745 bp upstream
Tssr63037	transcription start site region 63037	712 bp upstream
Tssr63038	transcription start site region 63038	687 bp upstream
Tssr63039	transcription start site region 63039	619 bp upstream
Tssr63040	transcription start site region 63040	575 bp upstream
Tssr63041	transcription start site region 63041	528 bp upstream
Tssr63042	transcription start site region 63042	508 bp upstream
Tssr63043	transcription start site region 63043	491 bp upstream
Tssr63044	transcription start site region 63044	456 bp upstream
Tssr63045	transcription start site region 63045	376 bp upstream
Tssr63046	transcription start site region 63046	363 bp upstream
Tssr63047	transcription start site region 63047	342 bp upstream
Tssr63048	transcription start site region 63048	308 bp upstream
Tssr63049	transcription start site region 63049	284 bp upstream
Tssr63050	transcription start site region 63050	239 bp upstream
Tssr63051	transcription start site region 63051	217 bp upstream
Tssr63052	transcription start site region 63052	1285 bp downstream
Tssr63053	transcription start site region 63053	1395 bp downstream
Tssr63054	transcription start site region 63054	1562 bp downstream
Tssr63055	transcription start site region 63055	1589 bp downstream
Tssr63056	transcription start site region 63056	1630 bp downstream
Tssr63057	transcription start site region 63057	1663 bp downstream