rs247746378 SNP Detail

Summary

• ID
  rs247746378
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72439310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGAGA GAGGAAGCAG
  TCCTGACTAG TAGAGGGGAA ACGCTCGCGA GCGTGTAGTG GGGGCGGGAG GGCGTGTAGA
  TTCGTTTCAC CTTACACACT AGGAAGCGAT CAATTCTCCC TTCCACGCCG CACGGTGGCA
  CAGGTCCACT CCCTGCCGCC GTCACGCGAG CCCGCTCCCC GCCCCCAACA CGCCCCCCCA
  M
  CCCCCTCGGC CGCCGCAGCC ACCCGACCGC TCCCTCGGGG CCCCCGCCGC GGCTTCCTGG
  GCCCGCGGCC CGTAGCCGCT CCGCTCCGCC CCGCGCGCTC CGCGCCCCCC TGCGGCCCCC
  GCGCCGCGCC CGCACACGCG CGTCCACGCC CCCCGGCCGC GCGGTAGGTG TTGTGCCGTC
  TGCGCCGGGC CGCAGTGCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss378020714	MGP_WTSI_9_72379835	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs247746378					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020714	MGP_WTSI_9_72379835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72439310 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	170 bp upstream
Cpgi22017	CpG island 22017	within coordinates
Rfx7	regulatory factor X, 7	212 bp upstream
Rr401508	regulatory region 401508	1370 bp downstream
Rr401509	regulatory region 401509	108 bp downstream
Rr682766	regulatory region 682766	1552 bp distal
Rr682767	regulatory region 682767	1607 bp distal
Rr682768	regulatory region 682768	1051 bp distal
Rr682769	regulatory region 682769	857 bp distal
Rr682770	regulatory region 682770	within coordinates
Rr682771	regulatory region 682771	56 bp distal
Tssr86008	transcription start site region 86008	271 bp downstream
Tssr86009	transcription start site region 86009	78 bp downstream
Tssr86010	transcription start site region 86010	156 bp upstream
Tssr86011	transcription start site region 86011	186 bp upstream
Tssr86012	transcription start site region 86012	759 bp upstream