rs247751485 SNP Detail

Summary

• ID
  rs247751485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72571203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGGCAA TCCTGTTTTT
  TTTTTTTTTT TTTTTTTTTT TAAACATTGG TGGACTGGAG GACATATTAA ATGAACTAAG
  CCCGGCCTAG AGAGAGGTTA CTTGAGATCT CATGGGGAAT CTAGAAAGTT GCTATTATAA
  AAGTTGTTAG TAAAGGGTCT GAAGAGGTGG CTCGGTGGCC GAGCTCTTGT AAAGGACCAG
  Y
  GTACAGCCCC ATGGTGGGGC CCCTCATAAC AGTAATTCCA GCTCTGGATC TCTGTGGCAC
  CAGCACACAT GGCATACATT CACTCTCTCT CTCTCTCTCT CTCTCACTCA CACACACACA
  CACACACACA CACACACACA CACGAGTACA TTACTGGAGC TGGGGAGAGC AGTTGGGGAA
  GAGAGGCCAA AGCAAAGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378022998	MGP_WTSI_9_72511728	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247751485					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378022998	MGP_WTSI_9_72511728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72571203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22018	CpG island 22018	507 bp distal
Nedd4	neural precursor cell expressed, developmentally down-regulated 4	within coordinates
Rr682797	regulatory region 682797	1429 bp distal
Rr682798	regulatory region 682798	903 bp proximal
Rr682799	regulatory region 682799	940 bp proximal
Tssr86018	transcription start site region 86018	1909 bp downstream
Tssr86019	transcription start site region 86019	1509 bp downstream
Tssr86020	transcription start site region 86020	1453 bp downstream
Tssr86021	transcription start site region 86021	1398 bp downstream
Tssr86022	transcription start site region 86022	152 bp downstream
Tssr90495	transcription start site region 90495	651 bp upstream
Tssr90496	transcription start site region 90496	624 bp upstream
Tssr90497	transcription start site region 90497	595 bp upstream