rs247760984 SNP Detail

Summary

• ID
  rs247760984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170834941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAAACC GAGGTCCTCT
  GGAATATCAG CCAGTGCTCT TAATGGCTGC ACCATCTCTC CTACCCCCTA AAACTACCAT
  TAAAAATTAT TTCTTGTAGA AAACCCAAGT CTGAGTCCCA AGCCCCACAT CTGGTGGCAT
  CTGCAGGGTA TTGGACACCT CTGGCTCCCG AGCACATCTG CACTCATGTG TTTAGACACA
  Y
  ACACACACAT GCACCCACTC ATGCATGTGT TCACAAGCAC ACACAATTAA AGATGATAGA
  AATAAATATA CATTTAAAAA TTTTTTTAAA TGACTAATTT GAGCATAGTC TAACTATGCT
  TTAATGTGGA TAGGCTAGTT ATAAGTCAGT CTAAAAGTTG GTGTCATGGT TTGGAAAGTT
  CTCATATGGC AACAGGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	SPRET/EiJ
ss352378002	MGP_WTSI_1_172937503	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	SPRET/EiJ
rs247760984					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352378002	MGP_WTSI_1_172937503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170834941 () rs orientation: forward

Symbol	Name	Function Class
Rr423182	regulatory region 423182	708 bp distal
Rr423183	regulatory region 423183	252 bp distal