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rs247766693 SNP Detail
Summary
  • ID
    rs247766693
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:127583620 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTCTTCTCA AAGCCCAGCT
CCCGGGTCAC ATGCCATCTA GAGCTGCCTC TTGTTGGAGA AGGTGCGGTC GCCCCGGGTG
CCCGGCGACT CAAACCCGGT CAGTCAGGAG ACCTCAGAGA GGCGACAGGG GGCAGGGCTT
CCTGTGGAAA AGGGCTGGAC GGCGGCGGCA GCCTCTTGCC TGGCTCTGCG GGGCTTTCCT
Y
CCGGCAAGGG CTTTGCCGAG GTCACTCGCG CGAGGCCGCT CTTGGCGCGC CCGTGGGAGG
CTCGGTGGCG TGGGAGGACC AGCGACCTGC GGATTCCTCG AGCTCCCACG GCGCTGGCAG
CGACGGTCCC CCACCCCCAC CCCTATCCCC AGGCTTCCAC CAGAAGGCTC CGCAAGACTC
ACGGACCTCC AAGTCCCCAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss359647228 MGP_WTSI_3_127492889 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs247766693 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss359647228 MGP_WTSI_3_127492889 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127583620 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13800 CpG island 13800 within coordinates
Cpgi13801 CpG island 13801 667 bp proximal
Gm56817 predicted gene, 56817 within coordinates
Gm65225 predicted gene, 65225 422 bp downstream
Rr584859 regulatory region 584859 1657 bp distal
Rr584860 regulatory region 584860 49 bp distal
Rr584861 regulatory region 584861 152 bp distal
Rr584862 regulatory region 584862 within coordinates
Rr584863 regulatory region 584863 276 bp proximal
Rr584864 regulatory region 584864 844 bp proximal
Tifa TRAF-interacting protein with forkhead-associated domain within coordinates
Tssr31594 transcription start site region 31594 769 bp downstream
Tssr31595 transcription start site region 31595 757 bp downstream
Tssr31596 transcription start site region 31596 724 bp downstream
Tssr31597 transcription start site region 31597 684 bp downstream
Tssr31598 transcription start site region 31598 661 bp downstream
Tssr31599 transcription start site region 31599 162 bp downstream
Tssr31600 transcription start site region 31600 94 bp downstream
Tssr31601 transcription start site region 31601 42 bp downstream
Tssr31602 transcription start site region 31602 within coordinates
Tssr31603 transcription start site region 31603 15 bp upstream
Tssr31604 transcription start site region 31604 132 bp upstream
Tssr31605 transcription start site region 31605 631 bp upstream
Tssr31606 transcription start site region 31606 829 bp upstream
Tssr31607 transcription start site region 31607 1067 bp upstream
Tssr31608 transcription start site region 31608 1135 bp upstream
Tssr31609 transcription start site region 31609 1186 bp upstream
Tssr31610 transcription start site region 31610 1295 bp upstream
Tssr31611 transcription start site region 31611 1403 bp upstream
Tssr35598 transcription start site region 35598 213 bp upstream
Tssr35599 transcription start site region 35599 131 bp upstream
Tssr35600 transcription start site region 35600 103 bp upstream
Tssr35601 transcription start site region 35601 70 bp upstream
Tssr35602 transcription start site region 35602 230 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory