rs247770978 SNP Detail

Summary

• ID
  rs247770978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60701672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGGGTT GTACTAGTAA
  ATCAAAAGCA GTGATTACAG ACAAACCTCG GAAGCTTCGT TAACATGTAT AAACCAAGGG
  GTTCCATCCC AGCACCACAT GAACCGAGAG CGATAGCTCT TACTGGTGAG GTGGAGGCAG
  AACCATTAGA AGTTCAAGGT CATCCTTGGC TACACATCAA GTTCGAGGAC AGCATGTGTG
  R
  CACTCACACC TCAAACAAAA CAAAAAGAAA CAATCGCAAA GATTAGAAAT TACATACCTT
  GTATTAGGAG CGTGGATTTT GTGAAAAGGT TCCAACCCTT GGTGCAGGGT GGCCTCCAGT
  TCACTTGGTT TCGGGAGCTG GCCGTAAACG TCTGTTCCTC CGGTCTTTAT GAAAGGGACT
  AAACGCGTTG TGGTGGCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383571584	MGP_WTSI_11_60624348	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247770978					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383571584	MGP_WTSI_11_60624348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60701672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2996	CpG island 2996	44 bp proximal
Gm74448	predicted gene, 74448	347 bp upstream
Rr402613	regulatory region 402613	319 bp upstream
Rr448485	regulatory region 448485	1830 bp distal
Rr448486	regulatory region 448486	within coordinates
Rr448487	regulatory region 448487	409 bp proximal
Shmt1	serine hydroxymethyltransferase 1 (soluble)	within coordinates
Tssr108308	transcription start site region 108308	1971 bp upstream
Tssr108309	transcription start site region 108309	178 bp downstream
Tssr108310	transcription start site region 108310	259 bp downstream
Tssr108311	transcription start site region 108311	382 bp downstream
Tssr108312	transcription start site region 108312	409 bp downstream