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rs247783049 SNP Detail
Summary
  • ID
    rs247783049
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:70704545 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAATGTGGAA GCCCATCATA
GTACTTGGAC TTCATCTGCT TTTGTGCCTT CACTAAGTTT TTAAACATGA GCTGGCTCCT
ATCTGCCATT GGCAAGGCTG GGCACTACCC ACAACCTACT TCAAGGACCT CTATACCGTG
AGATTACACA CATACATCAA AATTTGGGAA AAGTTCTACC AAGCTGAGAG CTGATCACCC
Y
ACTCTTAGGT GCTTATCTCT GTACACCAGA AACCTTAAGA AGCAACCAGT ATTGAGAGAC
TCATTTATGA AAGTCTAAAA CTGGATACAA CCAAAATGTC CACCAACAGT TAAATTATGA
CATGTTCACA ATTGAGCTAT TACTTAATAA GGAGAATTAA TAAAATAAAA CTTAAGAGCA
TAGTTTAATC TCATAAACAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368707628 MGP_WTSI_6_70677555 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247783049 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368707628 MGP_WTSI_6_70677555 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:70704545 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm30211 predicted gene, 30211 1652 bp upstream
Gm68839 predicted gene, 68839 595 bp upstream
Igk immunoglobulin kappa chain complex 807 bp downstream
Igkc immunoglobulin kappa constant 807 bp downstream
Rr158 regulatory region 158 1610 bp distal
Rr150202 regulatory region 150202 within coordinates
Rr399685 regulatory region 399685 1714 bp downstream
Rr399686 regulatory region 399686 750 bp downstream
Tssr1880 transcription start site region 1880 710 bp downstream
Tssr56956 transcription start site region 56956 1728 bp downstream
Tssr56957 transcription start site region 56957 1089 bp downstream
Tssr56958 transcription start site region 56958 1073 bp downstream
Tssr56959 transcription start site region 56959 1055 bp downstream
Tssr56960 transcription start site region 56960 1040 bp downstream
Tssr56961 transcription start site region 56961 1024 bp downstream
Tssr56962 transcription start site region 56962 1012 bp downstream
Tssr56963 transcription start site region 56963 965 bp downstream
Tssr56964 transcription start site region 56964 954 bp downstream
Tssr56965 transcription start site region 56965 942 bp downstream
Tssr56966 transcription start site region 56966 934 bp downstream
Tssr56967 transcription start site region 56967 914 bp downstream
Tssr56968 transcription start site region 56968 884 bp downstream
Tssr56969 transcription start site region 56969 860 bp downstream
Tssr56970 transcription start site region 56970 841 bp downstream
Tssr56971 transcription start site region 56971 829 bp downstream
Tssr56972 transcription start site region 56972 770 bp downstream
Tssr56973 transcription start site region 56973 759 bp downstream
Tssr56974 transcription start site region 56974 729 bp downstream
Tssr56975 transcription start site region 56975 692 bp downstream
Tssr61321 transcription start site region 61321 1052 bp upstream
Tssr61322 transcription start site region 61322 904 bp upstream
Tssr61323 transcription start site region 61323 823 bp upstream
Tssr61324 transcription start site region 61324 746 bp upstream
Tssr61325 transcription start site region 61325 713 bp upstream
Tssr61326 transcription start site region 61326 700 bp upstream
Tssr61327 transcription start site region 61327 674 bp upstream
Tssr61328 transcription start site region 61328 596 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory