rs247812347 SNP Detail

Summary

• ID
  rs247812347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191451755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCCTTC ATGGTCGCCA
  ACAACCTGGT CGCTATTCCA TCCTACATCT GCTATGTAAT TATACTGCAG CCACTCCGAG
  TGCTGGACAG TAAGCGCTTC TGGTATATCG AAGGACTCAT GTACAAATGG CTTTTAGGAA
  TGGTGGCTTC CTGGGGCTGG TATGCTGGAT ACACAGGTAA GAGGGAGAGC ACTTTAATGC
  Y
  CAGGAACCAA TTTGCAATGC TATGCATAAG TCAGGAGCCA TGATTGAATC TATGTTGTGC
  TTTGAGTTGA GAATGCCTTG GCTATTAGGA ACAAATAGTC TTGTTGGATT TCTCATCAAA
  ACCTCAGCCA GGAAGCCTAA TGTTTTCAGA AGTATAGTTT TATAATTAAA TATTATTGAT
  AGATGCCTTA AGTAGTGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352839515	MGP_WTSI_1_193543522	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247812347					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352839515	MGP_WTSI_1_193543522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191451755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	109 bp distal
Lpgat1	lysophosphatidylglycerol acyltransferase 1	Intron
Rr426207	regulatory region 426207	1799 bp distal
Rr426208	regulatory region 426208	1244 bp distal
Rr426209	regulatory region 426209	1643 bp distal
Rr426210	regulatory region 426210	838 bp distal
Tssr10776	transcription start site region 10776	1739 bp downstream
Tssr10777	transcription start site region 10777	1613 bp downstream
Tssr10778	transcription start site region 10778	1582 bp downstream
Tssr10779	transcription start site region 10779	1553 bp downstream
Tssr10780	transcription start site region 10780	1330 bp downstream
Tssr10781	transcription start site region 10781	1249 bp downstream
Tssr10782	transcription start site region 10782	1212 bp downstream
Tssr10783	transcription start site region 10783	414 bp downstream