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rs247813165 SNP Detail
Summary
  • ID
    rs247813165
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr15:32351634 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCCTACATG AACAATGTGC
    TAGAGAGTTT GTTTTGATAA AAATATCACT CCCGCTGTGT AGCATCACTT AATAATTGTT
    TCGGTATGAT GACACTCATT CCCCTTTTTA TATTTTTTTT TATTGTTTCT CGTTTTGTTG
    ATGTTATTCA AGTGGTAATT AGCTGCTGCT CTAGAATGGA GGCTGGAAAC AAGCACACGT
    G
    AAGAGAAGAT GTGCTCATGG ATGTGTTAGT AAGATCCAAC GTTTTGTGAG AAGTCTTTAT
    AACTAACATC TTAAGGATAT TAACTCATTG TCATTGCTTC ATTCTTTTTG ATTGTTTAAC
    TTTTAAAAAT CATATGGCTT TTTAAAATGA TGGCTTTTCC TATTTCTTTT TGCTCATTAG
    TTTTATCATT TAAAATATAA                                            
    
    G = G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss393558663 MGP_WTSI_15_32281243 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247813165 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss393558663 MGP_WTSI_15_32281243 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:32351634 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr313079 regulatory region 313079 1568 bp proximal
Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory