rs247813665 SNP Detail

Summary

• ID
  rs247813665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149561377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCCAGAG CAGCTGCGTT
  TTTAAATTTG AAATATGTTT GTTGGCATTC TTTTCATTTT GTGTCTCTGA AACCTCCACC
  ACCCCGGCTT TTTTTTAAGT ATATGAAAAC TCTTTTTTTT TTTTTTTTTT TTTTTGGTTT
  TTTCGAGACA GGGTTTCTCT GTGTAACCCT GGCTGTCCTG GAACTCACTT TGTAGACCAG
  R
  CTGGCCTCGA ACTCAGAAAT CTGCTTGCCT CTGCCTCCCA AGTGCTGGGA TTAAAGGCGT
  GGGCCACCAC CACCCAGCAG AATATGAGGT TGACCAGTTT TCCCTTTAGT TTTTTTTTTT
  TTTTTTTTTT TTTTTTTCCC ATGTGGTTGT TGGGATTTGA ACTGAGGACC TTCGGAAGAA
  CAATCGGTGC TCTTAACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367160444	MGP_WTSI_5_150440487	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247813665					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367160444	MGP_WTSI_5_150440487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149561377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	930 bp distal
Gm20005	predicted gene, 20005	820 bp upstream
Hsph1	heat shock 105kDa/110kDa protein 1	1536 bp upstream
Rr399535	regulatory region 399535	1400 bp downstream
Rr625552	regulatory region 625552	1752 bp distal
Rr625553	regulatory region 625553	1474 bp distal
Rr625554	regulatory region 625554	131 bp distal
Tssr49917	transcription start site region 49917	1457 bp downstream
Tssr49918	transcription start site region 49918	1388 bp downstream
Tssr49919	transcription start site region 49919	1373 bp downstream
Tssr49920	transcription start site region 49920	1071 bp downstream
Tssr54646	transcription start site region 54646	1722 bp upstream
Tssr54647	transcription start site region 54647	1699 bp upstream
Tssr54648	transcription start site region 54648	1659 bp upstream
Tssr54649	transcription start site region 54649	1621 bp upstream
Tssr54650	transcription start site region 54650	1573 bp upstream
Tssr54651	transcription start site region 54651	1217 bp upstream