rs247817871 SNP Detail

Summary

• ID
  rs247817871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25691322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCGGTGT ACTTGCCTGA
  AACTCAGGGA TTTGGTCTCG GCTTGCGAGT CCTCTTCCTC CTCGGGGTCG CCCTCGGGAC
  CTCCGGCTTC GTCCTCTCCG GCGCCCGAAC CGCGCACCGC GGACCACGTC CACTTGGCCC
  ACTGCACGGG CGACAGGATC TGCCAGGGAC TGAACGCCAT GAGCGCGGCT GCCGCCCCTG
  Y
  GGTGGGGGAA CGGCGGCCTC TTCCTTCAAA ATGGAGGGGC CTTGACAGGC GCCGGCAACG
  TCGCCGGCGA CCCGCGGATG TGGCTCAACG AGCGCCGTCG GGCCGGGCGC AGCGCTTCCT
  CCCACGGCCC CGCAGCGCCG CTCGCCCCCG CTCCTCCGGG CCGCCGCGCC GAAGCTCGCC
  CCCGCGCGTG CCCGCTCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373997371	MGP_WTSI_8_26311778	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247817871					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373997371	MGP_WTSI_8_26311778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25691322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20180	CpG island 20180	within coordinates
Rr661073	regulatory region 661073	133 bp proximal
Tacc1	transforming, acidic coiled-coil containing protein 1	within coordinates
Tssr76674	transcription start site region 76674	843 bp downstream
Tssr76675	transcription start site region 76675	148 bp upstream
Tssr80693	transcription start site region 80693	9 bp downstream
Tssr80694	transcription start site region 80694	43 bp downstream
Tssr80695	transcription start site region 80695	230 bp downstream
Tssr80696	transcription start site region 80696	479 bp downstream
Tssr80697	transcription start site region 80697	1133 bp downstream