rs247818855 SNP Detail

Summary

• ID
  rs247818855
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100982948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGCCTTGG TCCCAGGACT AAGCTCCCCC
  CTGCTGTGCC TCAGCTTTTT GATTCCTCTT TGGGCTCCAT CCCCACATTC CTATTGCTAT
  TCAATAGGCC TTCTGACGTC TGAGGTGGTA ACAAAGGTGA GGGAAAAGGA GGAGGTGAGG
  K
  GGGAAGAGAA TGGAAGCAGG TGAGCTCACA TCCTGCCTCC CCAGAGGTTT GGGAATGTGG
  CAAGTCACCC GGGCCAAGGC TCCAACGACC TCTAGCCCTA GCCAACAACA GAGGGGCCAG
  CAGGCTAGGG AGAGAAAACA CCATACCTGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324139240	CHEV_12_102254899	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247818855					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100982948 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88c	coiled-coil domain containing 88C	within coordinates
Gm36756	predicted gene, 36756	1871 bp downstream
Rr369588	regulatory region 369588	within coordinates
Rr471395	regulatory region 471395	45 bp distal
Rr471396	regulatory region 471396	1072 bp proximal
Tssr117343	transcription start site region 117343	541 bp upstream