rs247822961 SNP Detail

Summary

• ID
  rs247822961
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106764286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCGCTCC CGCGGCCGCT
  TGGCGGACGA TGACGAGCCA CGCCCGCTCG GGCTGGAGTC TCGCTCGCTC TGCCGCTTCA
  TCGCGCCGGT TCGGCGGGCG GGCGGGCGGC CCGCGGGTCC CTCAGAGCGG CGGCGGCGGC
  GGCCCAGGAG GCAGCGCCCC CGGCGCCGCC ATCTTGGACA AAAGGACTCG GCGCGGCGGC
  S
  GCGGCGGGGC GGGGCGGGAG CGGCGCCGAG GGGCCCGGCG CTGCGTTATC AAGCTGCGCC
  GGCCGCGACA CGTGACCGCG GTGGGCGGGC CGAGAGTTTC GCTCGCTGCC TATCACGGAG
  CTCCGTGGCC CCGCACCACG TGACATCTTG GCAACCAGAG GAAGCGGCCT GTCTTGCGAG
  CTTTGGCGCC GCCGCGTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss378838602	MGP_WTSI_9_106789418	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs247822961					SNP	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838602	MGP_WTSI_9_106789418	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106764286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1666 bp downstream
Rbm15b	RNA binding motif protein 15B	12 bp upstream
Rr401656	regulatory region 401656	91 bp upstream
Rr686406	regulatory region 686406	183 bp proximal
Rr686407	regulatory region 686407	331 bp proximal
Rr686408	regulatory region 686408	928 bp proximal
Tssr86941	transcription start site region 86941	650 bp downstream
Tssr91351	transcription start site region 91351	within coordinates
Tssr91352	transcription start site region 91352	16 bp downstream