rs247831645 SNP Detail

Summary

• ID
  rs247831645
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51183827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCCCGTG GTCCCGCCCC
  CAGAAATCAA CGTTCTTATT TGGAACAGCT CAGGGCGCAG ATTGGAACCT CGGGCCTGTC
  AATCGCGCGC GTTCTGTCCT CTCCCAGGCG CTTCCGCTAT GGTGGGAGGT TTGGGGGAGG
  GGAAAGGGGG CAATGCCGAG CCGAGACTTC CCCGGGGCCA GGACGCCCTC CCGCCCGCCC
  S
  GCTCCCCGCT TTCATCTTAC TGTGGACCAA AATAAACGTC CCCCTCCGCT GTCCCGCAGC
  CCCGGGCCGG CTGCGCGGAA TACACCCGGT GTCCTTCCCG TCCACCCTCA GTCACCCGCC
  CCACGAGGGA AGGAAGGGCA GCAGCCCGGT TCCCCCACGG CCGCCGTTAG CCGCGGCGGG
  GAGGTGCCGG GTCGGCGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357926571	MGP_WTSI_3_51080328	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247831645					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357926571	MGP_WTSI_3_51080328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51183827 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	353 bp upstream
Cpgi13132	CpG island 13132	within coordinates
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	within coordinates
Rr397655	regulatory region 397655	62 bp downstream
Rr576259	regulatory region 576259	132 bp distal
Rr576260	regulatory region 576260	within coordinates
Rr576261	regulatory region 576261	952 bp proximal
Rr576262	regulatory region 576262	1063 bp proximal
Tssr29048	transcription start site region 29048	132 bp downstream
Tssr29049	transcription start site region 29049	441 bp upstream
Tssr33194	transcription start site region 33194	346 bp upstream
Tssr33195	transcription start site region 33195	871 bp downstream
Tssr33196	transcription start site region 33196	905 bp downstream
Tssr33197	transcription start site region 33197	1064 bp downstream