rs247835244 SNP Detail

Summary

• ID
  rs247835244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70601058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAATGC TTTAGTTTTA
  CATGATGACC TTGGGTGTGG GAAAAGGAAA AGATGGCGGG AAGCGGGCGG GGGTGGGGGG
  GACAGGGAGG ATGACACGCC ACAGCTGCAT TTTATTTGGA AACTTTGGAG AAAGTGTTCC
  TGGTTAGACC TGCATTACTG CATTACACAG GGGAAAGACT GGTCCTTTTG ATGTCCCTTC
  Y
  CCCTTTTCCT GGTGAAGAAG TGACAGGTTT CAAGTATTAT TATGAAGATA CCTGCTTGCT
  TTACAGATCA CGAGCATTCT AAAAAGCCAT TTTTATAAAG CAGATATATC AGCAACCCTG
  GCATTTCACA TCTGTTTCAA TTTACGTTTC CTTTGATTTC CCATTTAAAC GTAAGAATTA
  AAGGGACAAT CACCTAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403745398	MGP_WTSI_X_68810627	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247835244					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403745398	MGP_WTSI_X_68810627	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70601058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22757	CpG island 22757	121 bp distal
Gm61711	predicted gene, 61711	1501 bp upstream
Hmgb3	high mobility group box 3	within coordinates
Rr406104	regulatory region 406104	1484 bp downstream
Rr691784	regulatory region 691784	1452 bp distal
Rr691785	regulatory region 691785	within coordinates
Tssr161165	transcription start site region 161165	1430 bp downstream
Tssr161166	transcription start site region 161166	1411 bp downstream
Tssr161167	transcription start site region 161167	1381 bp downstream
Tssr161168	transcription start site region 161168	1110 bp downstream
Tssr161169	transcription start site region 161169	548 bp downstream