rs247839447 SNP Detail

Summary

• ID
  rs247839447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115519975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTAAGTAA TTTGCTGCAA CTTCTTAATG
  TATCATTACT TACATGTTTT TAAATCAGTG GTTTATTTGT TACAGTTTAA GAGTTAATCT
  Tagccaggcg tggtggcgca cgcctttaat cccagcactc aggaggcaga ggcaggagga
  Y
  ttctgagttc gcggccagcc tgatctacaa agtaagtttc aggacagcca gggctataca
  tatatatata taaccatata tatatatata accctgtctc aaaaaaccaa aaAAAAAAAA
  AGAGTTAAtc ttttttaaag atttatttat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323863460	CHEV_11_115490463	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247839447					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115519975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	670 bp distal
Gm74427	predicted gene, 74427	154 bp downstream
Rr246115	regulatory region 246115	within coordinates
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	854 bp upstream
Tssr105892	transcription start site region 105892	726 bp downstream
Tssr111780	transcription start site region 111780	1440 bp upstream
Tssr111781	transcription start site region 111781	1411 bp upstream
Tssr111782	transcription start site region 111782	1390 bp upstream
Tssr111783	transcription start site region 111783	1358 bp upstream
Tssr111784	transcription start site region 111784	1027 bp upstream
Tssr111785	transcription start site region 111785	985 bp upstream
Tssr111786	transcription start site region 111786	899 bp upstream
Tssr111787	transcription start site region 111787	851 bp upstream