rs247841645 SNP Detail

Summary

• ID
  rs247841645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGTTTT TTTGTTTGTT
  TGTTTGTTTT TTTGTTTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTCTT TGTGGGTTGG
  TTTTTTTTTT TTTTTTGGTT TTTCGAGACA GGGTTTCTCA GTGTAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCG AACTCAGAAA TCTACCTGCC TCTGCCTCCC
  R
  AGTGCTAGGA TTAAAGCTGT GCGCAAGGTT AATTGGTGAT TCCGCTGAGT TGACAATAAA
  GGAGGGGGAT ATTTTGTGAC AGAAAGAACC AAACACAAAC AGTGCACACA CAAAAAATTG
  ACTTTCTTAC TTTACTTTTT TTTTTTTTTT TTTTTTTTTG ACTTTTCAGG GTTTTTAATA
  GTCACATGCA GAGGTCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646627	CHEV_14_60061373	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247841645					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679985 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	1205 bp distal
Gm45935	predicted gene, 45935	1656 bp upstream
Rr404137	regulatory region 404137	1478 bp downstream
Rr493049	regulatory region 493049	1672 bp distal
Rr493050	regulatory region 493050	1545 bp distal
Rr493051	regulatory region 493051	770 bp distal
Setdb2	SET domain, bifurcated 2	1656 bp upstream
Tssr125903	transcription start site region 125903	1954 bp downstream
Tssr125904	transcription start site region 125904	1540 bp downstream
Tssr129008	transcription start site region 129008	1649 bp upstream
Tssr129009	transcription start site region 129009	1439 bp upstream
Tssr129010	transcription start site region 129010	1428 bp upstream
Tssr129011	transcription start site region 129011	1229 bp upstream
Tssr129012	transcription start site region 129012	1226 bp upstream
Tssr129013	transcription start site region 129013	1219 bp upstream