rs247861778 SNP Detail

Summary

• ID
  rs247861778
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71248547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCAAGCT CCTACCCACA CGGACAGAGC CGGTTAGTCC
  GAAATGGCGG GAAGGGGCGG AGCACACATG GAGGGCGGGG CTAGAAAATT TCCCGAGGGC
  C
  CGGCCGCCCT GCTGCGCACG CGCACCTGCG CGCCCCCGCC GCCATGGCGC TGGCGCTGTC
  CAGTCAGCCG CGGGTGGTGG CGGCGACTTC CCCTCAGGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817334	CHEV_6_71221557	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247861778					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71248547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	within coordinates
Krcc1	lysine-rich coiled-coil 1	114 bp upstream
Mir8112	microRNA 8112	108 bp upstream
Rr146429	regulatory region 146429	within coordinates
Rr379579	regulatory region 379579	1663 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	634 bp downstream
Tssr56989	transcription start site region 56989	12 bp upstream
Tssr56990	transcription start site region 56990	109 bp upstream
Tssr61348	transcription start site region 61348	837 bp upstream
Tssr61349	transcription start site region 61349	815 bp upstream
Tssr61350	transcription start site region 61350	51 bp upstream