About   Help   FAQ
rs247864998 SNP Detail
Summary
  • ID
    rs247864998
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:54798944 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTAGCTCAGC CCTGCTCTTA
ACTCAGTATC CATCCAGGAA AGGGCACCTA GGGTCAGGGT GTATAAACGA GGCTGGCAAT
GGCTTAACCC GGTATCTGAC TGGAACCATG TCTCCTTAAT GTCTCTATCC TGTCTTTTCT
TCTCAGTGAG GGCAAACAGA AGCCTAAGGG CCAAAGCCTG ATGGCCCAAG GGCAAACACT
Y
TGGGGCCAAG CAGACCCAGG CCACTTGGCT GGCACCTGCA GGAGAGTTCC TGGGCTGGGT
GATGGCGCTG CCTCTAATTC CAGGGGTCCC AAGGGAACTG GCGAGCTGGC CAGGGCCTCC
CCTGGGCTCC TGAATTCCCA GATGAGAGGG ATGTGAATAC TGCCCTCCAA TCACCCGAAG
AAAGTCCTCA GCCACCTGCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383428882 MGP_WTSI_11_54721620 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T C T T T T T T T T C C T T C C T T C T T T T C T T T T T T T C C C T C T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247864998 SNP T T T T T C T T T T T T T T C C T T C C T T C T T T T C T T T T T T T C C C T C T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383428882 MGP_WTSI_11_54721620 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54798944 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 Intron
Rr447428 regulatory region 447428 1795 bp distal
Rr447429 regulatory region 447429 1212 bp distal
Tssr3502 transcription start site region 3502 1523 bp downstream
Tssr3503 transcription start site region 3503 1997 bp upstream
Tssr101551 transcription start site region 101551 1853 bp downstream
Tssr101552 transcription start site region 101552 1790 bp downstream
Tssr101553 transcription start site region 101553 1337 bp downstream
Tssr101554 transcription start site region 101554 1325 bp downstream
Tssr101555 transcription start site region 101555 1283 bp downstream
Tssr101556 transcription start site region 101556 988 bp downstream
Tssr101557 transcription start site region 101557 958 bp downstream
Tssr101558 transcription start site region 101558 941 bp downstream
Tssr101559 transcription start site region 101559 918 bp downstream
Tssr101560 transcription start site region 101560 872 bp downstream
Tssr101561 transcription start site region 101561 417 bp upstream
Tssr101562 transcription start site region 101562 441 bp upstream
Tssr101563 transcription start site region 101563 491 bp upstream
Tssr101564 transcription start site region 101564 505 bp upstream
Tssr101565 transcription start site region 101565 934 bp upstream
Tssr101566 transcription start site region 101566 984 bp upstream
Tssr101567 transcription start site region 101567 1345 bp upstream
Tssr101568 transcription start site region 101568 1421 bp upstream
Tssr101569 transcription start site region 101569 1504 bp upstream
Tssr101570 transcription start site region 101570 1526 bp upstream
Tssr101571 transcription start site region 101571 1580 bp upstream
Tssr101572 transcription start site region 101572 1675 bp upstream
Tssr101573 transcription start site region 101573 1712 bp upstream
Tssr101574 transcription start site region 101574 1726 bp upstream
Tssr101575 transcription start site region 101575 1774 bp upstream
Tssr101576 transcription start site region 101576 1788 bp upstream
Tssr101577 transcription start site region 101577 1817 bp upstream
Tssr101578 transcription start site region 101578 1900 bp upstream
Tssr108006 transcription start site region 108006 833 bp upstream
Tssr108007 transcription start site region 108007 446 bp downstream
Tssr108008 transcription start site region 108008 506 bp downstream
Tssr108009 transcription start site region 108009 522 bp downstream
Tssr108010 transcription start site region 108010 943 bp downstream
Tssr108011 transcription start site region 108011 1539 bp downstream
Tssr108012 transcription start site region 108012 1573 bp downstream
Tssr108013 transcription start site region 108013 1667 bp downstream
Tssr108014 transcription start site region 108014 1674 bp downstream
Tssr108015 transcription start site region 108015 1757 bp downstream
Tssr108016 transcription start site region 108016 1809 bp downstream
Tssr108017 transcription start site region 108017 1860 bp downstream
Tssr108018 transcription start site region 108018 1875 bp downstream
Tssr108019 transcription start site region 108019 1911 bp downstream
Tssr108020 transcription start site region 108020 1967 bp downstream
Tssr108021 transcription start site region 108021 1987 bp downstream
Tssr108022 transcription start site region 108022 1998 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
07/22/2025
MGI 6.24 		The Jackson Laboratory