rs247870530 SNP Detail

Summary

• ID
  rs247870530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152778546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCGCGG CCCCGCGGGT
  GCTGGCGGTC GCCGCCATCT TCCTCTCCTC CGACTCCTCC TCGCTTGGCG CGGGGTGGGG
  GGGGGGGAGA GTGAGTGAGG CGAGGGGGAG GGAGTTGGGG GGAGCGGCTC CGGCAGCGGC
  TGCGGCTCTG GCCTGTGGGG CGCAGGGACG CTCCGGCTCC GGAGGGGGGG GGGAAAAAGA
  R
  GGGGAAAGGG GCGGGGAAAG AGGAGGGGAG AAGCAGAGGA AGGAAGTCGG GTTCGCTCTC
  GCGAGACTTC AGCAGCGCCG GTCCCTCTGG GTGCTTTCCG CCGCTCTGTA GCGCTCCCTC
  TTGGGATCGG CGAGCGGTGC GGTGCCCGCG CGCCGGCCGA ACGATCCGGT GCTGGTGCCC
  GGCGGCCTCC TAAGGCTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
ss351959051	MGP_WTSI_1_154749925	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J
rs247870530					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351959051	MGP_WTSI_1_154749925	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152778546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi860	CpG island 860	within coordinates
Cpgi861	CpG island 861	1891 bp proximal
D1Mit502	DNA Segment, Chr 1 Massachusetts Institute of Technology 502	1034 bp distal
Gm70930	predicted gene, 70930	1262 bp upstream
Rr396386	regulatory region 396386	168 bp downstream
Rr396387	regulatory region 396387	337 bp upstream
Rr396388	regulatory region 396388	1738 bp upstream
Rr420557	regulatory region 420557	184 bp distal
Rr420558	regulatory region 420558	within coordinates
Rr420559	regulatory region 420559	772 bp proximal
Rr420560	regulatory region 420560	1273 bp proximal
Smg7	SMG7 nonsense mediated mRNA decay factor	mRNA-UTR
Tssr9437	transcription start site region 9437	49 bp upstream
Tssr9438	transcription start site region 9438	102 bp upstream
Tssr9439	transcription start site region 9439	1008 bp upstream
Tssr14242	transcription start site region 14242	126 bp upstream
Tssr14243	transcription start site region 14243	45 bp upstream
Tssr14244	transcription start site region 14244	16 bp upstream
Tssr14245	transcription start site region 14245	268 bp downstream
Tssr14246	transcription start site region 14246	293 bp downstream