rs247874987 SNP Detail

Summary

• ID
  rs247874987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41493212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATATGT GTGTGTTGCA
  TATACAGGGC TGTATGGAGA CAGAAATGAA TCTAAATTTT GTGAAGGGGA GAGGTGTAGG
  GAGCCAGGAT GTAGTCACAC TGGACCACCT GTTTGCTGCA TTTTACTCAC GAGTCTGCAA
  CCGAAATTGC CTGTCATTTT TATTTTATTT TTGCTTTGTT TTGTCTCAAG AAAGAATGAA
  R
  GAATCGTGTT GCGCTCCCCT CAGTCCCTGA GACCCTAACT TGTGATGTTT ACCGTTTAAA
  TCCACGGGTT AGGCTCTTGG GAGCTGCGGG TCGTGCCTTT GCATCGCTGA AGGAACTTTT
  TGTCTTTTAA GGAAGAGAGA GACAGAGAGA CAGAGAGACA CAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377342630	MGP_WTSI_9_41389999	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247874987					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342630	MGP_WTSI_9_41389999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41493212 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	10 bp upstream
Tssr84515	transcription start site region 84515	1949 bp downstream
Tssr84516	transcription start site region 84516	1925 bp downstream
Tssr84517	transcription start site region 84517	1899 bp downstream
Tssr84518	transcription start site region 84518	1199 bp downstream
Tssr84519	transcription start site region 84519	1164 bp downstream
Tssr84520	transcription start site region 84520	994 bp downstream
Tssr84521	transcription start site region 84521	949 bp downstream
Tssr84522	transcription start site region 84522	912 bp downstream
Tssr84523	transcription start site region 84523	816 bp downstream
Tssr84524	transcription start site region 84524	656 bp downstream
Tssr84525	transcription start site region 84525	600 bp downstream
Tssr84526	transcription start site region 84526	565 bp downstream
Tssr84527	transcription start site region 84527	84 bp upstream
Tssr84528	transcription start site region 84528	1108 bp upstream
Tssr88997	transcription start site region 88997	1108 bp upstream