rs247876796 SNP Detail

Summary

• ID
  rs247876796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15538132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTGAA GCACTTACCC
  TGCTGTGGTA TGGGCTTGGT TCTCCATGCC AAGAAATGTC TACATCTGGC TTGGTACTTC
  TTGATATTTA ATCTGTGAGG AGGGAAATTA TTTAGAATTA TAAAATGCTT AAACATATTA
  ATATAAGATG TTATTTTTGT TGTTGGCATG CCATTTAGGA TAGGTTCTCT GAGCATGGAC
  R
  CTGTTGTTTC AACAGAGAAG GCCCACAGTG GGGGTGGGGG TGGGGGTGGG GGTGGGGTGG
  GGGTGGGGTT TCTTTGCCTT GATGAAACCA GCAAGCATAC CTCCTTAACT CAGCTAGGCA
  GCTAGGTGTC AGTTGCCTAA TTTGTGCAAA AGTTCCTAAT TCCTGGTTTG AGAAGTGATA
  TCTAGAAGCC CTCACAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376737685	MGP_WTSI_9_15431280	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247876796					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737685	MGP_WTSI_9_15431280	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15538132 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	885 bp proximal
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	807 bp proximal
Rr674359	regulatory region 674359	1057 bp proximal
Rr674360	regulatory region 674360	1110 bp proximal
Tssr83870	transcription start site region 83870	1089 bp upstream
Tssr88249	transcription start site region 88249	984 bp downstream
Tssr88250	transcription start site region 88250	1004 bp downstream
Tssr88251	transcription start site region 88251	1034 bp downstream
Tssr88252	transcription start site region 88252	1061 bp downstream
Tssr88253	transcription start site region 88253	1074 bp downstream
Tssr88254	transcription start site region 88254	1447 bp downstream
Tssr88255	transcription start site region 88255	1490 bp downstream