rs247877066 SNP Detail

Summary

• ID
  rs247877066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152103970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTTCTA GGGTGCTGGT
  AGCTTTGCAC ACAGAAAGTT CTTTTAAAAC AAAGATTTAA GGAAACATCA GCTTTATAAT
  TTTTAATGCT TATGTAAGTA CCAATTATGC ATTCTAAACC AAAAACATGC CTATGGATGT
  TAGTTCTTTT AAAATTTTGA CCCTGAGTTT TAAAAAGATG CTTATTTTAT GTGTATGTGC
  Y
  CTAGTGTTGT GGTCAAGGAG GCCTTGAGGG TCAGAAAAGG ATTGTCAACA GTCCCTGGAG
  TTACAGGCGG TGGTTGTGCG CTGCTATGTG GGTGCTTGGA ACCAGAGGAT CAGCAGCAAG
  TGCTCTTAGC TGCTGAGGTG TCTCTTCTAG CCCCTCAGAG TAGTAGTTTA ATCCAATCAC
  TAGAACGATA GACACCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028819	CHEV_3_152061297	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247877066					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152103970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			1060 bp distal
Rr587547	regulatory region 587547			1629 bp distal
Rr587550	regulatory region 587550			1615 bp distal
Rr587551	regulatory region 587551			399 bp distal
Rr587552	regulatory region 587552			615 bp distal
Tssr32413	transcription start site region 32413			1939 bp downstream
Tssr32414	transcription start site region 32414			1631 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				Noncoding-Transcript-Variant